I’m also a bit weirded out by the lack of mentions of dominators (in TFA or in the article[1] it links to). Once you have the dominator tree, though, you’re still going to need to answer LCA queries on it (in this problem and in an SSA-based compiler both), so there seems to be no way around this part.
The algorithm in the article does O(1) queries with O(V+E) preprocessing (assuming linear-preprocessing LCA, which, yeah). What’s the best algorithm for dominator trees? People usually talk about Lengauer–Tarjan[2], which is linear in practice (linear except for UNION-FIND), and not the linear one by Georgiadis[3,4]. Unfortunately, I’m not a compiler person.
[1] https://doi.org/10.1016/j.ipl.2010.02.014
[2] https://maskray.me/blog/2020-12-11-dominator-tree