Do you store your SSDs powered? They can lose information if they're not semi-frequently powered on.
Although, in my case, the original is evolving, and renaming a folder and few files makes that diff go awry.. needing manual intervention. Or maybe i need a content-based-naming - $ ln -f x123 /all/sha256-of-x123 then compare those /all
You're quite right that we have no visibility into this process, but that feels like something to bring up with the SFF Committee, who keeps the S.M.A.R.T. standard.