There's also a lot of interesting data coming up mildly positive on Caffeine health benefits in the literature.
http://www.ncbi.nlm.nih.gov/pubmed?term=caffeine%20cancer
http://www.ncbi.nlm.nih.gov/pubmed/21907331
http://www.ncbi.nlm.nih.gov/pubmed/19581722
Moderate caffeine intake is on track to be firmly in the green for most people. However, not everyone metabolizes and reacts to it identically, so the author of the article in question may be one of those people who does not get a lot of benefits.
But there is this funny idea floating around that caffeine is carcinogenic and long-term use may cause cognitive impairment, and there is very little evidence for that.