1. very easy for MITM-type attacks: this is negated by using SSL
2. JavaScript is too "malleable" for crypto - this argument is not very clear; yes, JS is "malleable" - so what, if we can be reasonably sure it is not "infected", by using server-side tools like signatures and SSL? This is highly debatable...
3. server breaches easily propagate to users: this is a real issue, but it is a real issue with many products that auto-update themselves, such as OSes (with patches/updates), browsers, anti-viruses, etc. Thus although this is a valid concern, it is part of everyday life of most Internet users,and not something JS crypto is specifically bad at.