In short, if it tastes nice and was man-processed, it probably will be bad for you?
An example they use is eggs: Pan-fried eggs are listed as high in AGEs, whereas scrambled eggs aren't. Admittedly my diet isn't the best, but I wouldn't have expected a meaningful difference between ordering my eggs scrambled vs sunnyside-up.
Or for meat, stewed meat would be healthier than roasted meat.
I'm suddenly curious about coffee, now that they mention it...
Ain't greater modern cargo cult than "healthy food".
People only needed to live long enough to reproduce, and that’s what our bodies are optimized for. Most people would prefer to live longer, though. ;)