I suppose there might have been a flurry of scary lawyer letters being sent back and forth and the lawsuit only happened once negotiations broke down.
Thus Nintendo is likely more concerned with consumer confusion between Palworld and Pokémon merch than between the games. On top of that it would damage The Pokémon Company's position in any negotiations surrounding merchandising agreements, because partners can use a potential Palworld merch deal as leverage to get a better deal from The Pokémon Company.
[1] https://palworld.co.jp/en/news/?article_id=65768
[2] https://www.pocketgamer.biz/the-pokmon-company-caught-108-bi...
[3] https://www.pocketgamer.biz/pokmon-go-catches-nearly-8-billi...
Initial release date: January 19, 2024