Some things I want out of the final series of commits:
1) everything builds. If I need to revert something or roll back a commit, the resulting point of the codebase is valid and functional and has all passing tests.
2) features are logically grouped and consistent - kinda similar to the first, but it's not just that I want the build to pass, I don't want, say, module A to be not yet ready for feature flag X but module B to expect the feature flag to work. In the original article, this is to say that I want the three commits listed, but not one halfway through the "migrate API users" step.
But when I'm developing I do want to commit halfway through steps. I might commit 50 lines of changes that I'm confident in and then try the next 50 lines and decide I want to throw them away and try a different way. I might just want to push a central copy of what I've got at the end of the day in case my laptop breaks overnight (it's rare, but happens!). I might want to push something WIP for a coworker to take an initial look at with no intent of it being ready to land.
But I don't want any of those inconsistent/not-buildable/not-runnable states to be in the permanent history. It fucks with things like git bisect and git blame.