This sort of thing is exactly why I have automatic updates disabled on my Windows partition. I've been burned so many times by bad Windows updates breaking stuff. My favourite is when stuff breaks during the "configuring updates" stage after a reboot, leaving Windows in a boot loop with no error codes or anything to help you figure it out. And of course the documentation from MS is utter garbage. Most of the time the only solution I found was to reinstall Windows.
Now I always google around a bit before applying any fresh Windows updates to see of there's any breakage reported.