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There are many companies in the 'which proteins are in my sample' space (Olink, SomaLogic, etc), I actually dont know any others in the 'what proteins interact with other proteins' space

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There was a recent Kaggle competition with the goal of developing a small molecule - protein model hosted by Leash Biosciences: https://www.kaggle.com/competitions/leash-BELKA.

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