The chances of a attack like this being undetectable are exceedingly low. You would likely need to compromise nearly every aspect of the plane to make sure you have suppressed every available cross-checking mechanism. Does not stop it from happening, but it would not, in any way, be some sort of magic assassin weapon.
[1] https://en.wikipedia.org/wiki/Pan_Am_Flight_103_bombing_inve...
It wasn't the super deep check of the debris that pointed them to a bomb,it was a process that started with watching debris on primary radars fall away from a point where a moment before a transponder was squawking, it was finding the pressure spike on VCR and FDR, it was finding explicit explosion-affected parts, which guided which parts to reconstruct in 3D (very rare thing to do), and to finally find remains of the bomb itself.
I think there is concern there with undiagnosable crashes, but also a more pronounced concern with hijacking. If you have access to the plane you can just plant a bomb. With this you could capture the plane for hostage or turn it into a missile.
Car bombings still happen sometimes but it’s much easier to just shoot someone or push them off a balcony.
That he was killed by manipulating the data bus seems entirely speculative and exceedingly unlikely. If you have that kind of access to the plane you can plant a bomb or if you just want to down the plane Russia has potent anti-air weapons which trivially can take down a sub sonic passenger jet.