DuckDB will error-out with an out-of-memory exception in very simple DISTINCT ON / GROUP BY queries.
Even with a temporary file, an on-disk database and not keeping the initial order.
On any version of DuckDB.
DuckDB will error-out with an out-of-memory exception in very simple DISTINCT ON / GROUP BY queries.
Even with a temporary file, an on-disk database and not keeping the initial order.
On any version of DuckDB.
While I am a Linux user, tried this on a available Windows 10 machine (I know...Yuck!)
1) Setup and install no prob. Tracked the duckdb process memory usage with PowerShell, like this:
Get-Process -Name duckdb | Select-Object Name, @{Name="Memory (MB)";Expression={[math]::round($_.WorkingSet64/1MB,2)}}
2) Used this simulated netflix table dataset available from an S3 bucket, as used in this example blog. Installed the aws extension not the one mentioned in the blog: https://motherduck.com/blog/duckdb-tutorial-for-beginners/Section in the blog: "FIRST ANALYTICS PROJECT"
Table has 7100 rows as seen like this:
SELECT COUNT(*) AS RowCount FROM netflix;
3) Did 8 different queries using DISTINCT ON / GROUP BY The one below, being one example:
SELECT DISTINCT ON (Title)
Title,
"As of",
Rank
FROM netflix
ORDER BY Title, "As of" DESC;
I am not seeing any out of memory or memory leak from these quick tests.I also tested, with the parquet file from the thread mentioned below by mgt19937. It is 89475 rows. Did some complex DISTINCT ON / GROUP BY on it, without seeing neither explosive memory use or something similar to a memory leak.
Do you have a more specific example?
For analytic queries, I don't feel that is anywhere near what I've seen at multiple companies who gave opted for columnar storage. That would be at most a few seconds of incoming data.
With so few rows, I would not be surprised if you could use standard command line tools to get the same results from a text file of similar size in an acceptable time.
Just trying to reproduce the use case...Also tried with the Parquet file from the support ticket. Around 90,000 rows...
``` COPY ( SELECT DISTINCT ON (b, c) * FROM READ_PARQUET('input.parquet') ORDER BY a DESC ) TO 'output.parquet' ( FORMAT PARQUET, COMPRESSION 'ZSTD' ) ; ```
Where the input file has 25M rows (500Mb in Parquet format) containing 4 columns, a and b are BIGINTs and c and d are VARCHARs.
On a Mac Book Pro M1 with 8GB of RAM (16x the original file size), the query will not finish.
This is a query that could very easily be optimised to take little amounts of space (hash the DISTINCT ON key, and replace in-place the already seen values if the value of "a" is larger than the one that already exists.)
Query will complete, but in aprox 3,5 to 4 min, you will need up to 14 GB of memory. (4 Core, Win10, 32GB RAM).
You can see below, memory usage in MB, throughout the query, sampled at 15 sec interval.
duckdb 321.01 -> Start Query
duckdb 6302.12
duckdb 13918.04
duckdb 10963.74
duckdb 8586.76
duckdb 7613.86
duckdb 6749.53
duckdb 5990.96
duckdb 5293.35
duckdb 4205.53
duckdb 3153.59
duckdb 1482.86
duckdb 386.29 -> End Query
So yes, there are some opportunities for optimization here :-)Indeed, 14GB seems really high for a 400MB Parquet file, that's a 35x multiple on the base file size.
Of course, the data is compressed on disk, but even the uncompressed data isn't that large so I believe indeed that quite a lot of optimisations are still possible.
Newer DuckDbs are able to handle out of core operations better. But in general just because data fits in memory doesn’t mean the operation will — and as I said 8GB is very limited memory so it will entail spilling to disk.
Parquet files are compressed, and many analytic operations require more memory than the on disk size. When you don’t have enough ram DuckDb has to switch to out of core mode which is slower. (It’s the classic performance trade off)
8gb of ram is not enough usually to expect performance from analytic operations - I usually have minimum 16. My current instance is remote which has 256gb ram. I never run out of ram and DuckDb never fails and runs super fast.
DuckDB has been evolving nicely, I especially like their SQL dialect (things like list(column1 order by column2), columns regex / replace / etc) and trust they'll eventually resolve the memory issues (hopefully).
At what data volumes does it start erroring out? Are these volumes larger than RAM? Is there a minimal example to reproduce it? Is this ticket related to your issue? https://github.com/duckdb/duckdb/issues/12480