Yes. Again, this is a familiar issue to people who are familiar with linguistics, and one of the criticisms of the Rao et al. publication is that none of the authors are familiar with the methodology used in historical linguistics to solve comparable problems in other parts of the world. (I am able to read ancient Chinese and am intimately familiar with the history of the Chinese script, which is an illuminating example for comparing periods of early ornamentation, proto-writing, and full writing as that script developed with attested archeological finds.) I am also very familiar with the extent of the Indo-European languages and with the fact that many languages spoken in India (e.g., Tamil, a language spoken by many friends of mine) are not Indo-European. The links I already provided give much of the needed background information.
But here are a few more links, for onlookers who are curious about this issue and may be interested in responses to the Rao et al. publication.
http://www.safarmer.com/Refutation3.pdf
http://www.safarmer.com/more.on.Rao.pdf
http://horadecubitus.blogspot.com/2009/04/indus-what-did-rao...
http://earningmyturns.blogspot.com/2009/04/falling-for-magic...
(The link immediately above is by a former president of the Society for Computational Linguistics.)
http://www.mitpressjournals.org/doi/pdf/10.1162/coli_a_00011
(The review article linked above from the journal Computational Linguistics discussed the methodological issues involved.)