Google has a lot of custom encoding silicon, too, AFAIK.
Storage is the biggest question of the three. Linus Sebastian specifically called this out when YouTube started really pushing to make the non-Premium experience dreadful. There isn't really some secret special sauce you can buy or make for storage. Literally everything is being stored with the same hard drives, SSDs, discs, or tapes you can just go out and buy. The only specialization you can do is build or buy equipment to handle extreme numbers of them. Google does buy these in bulk, so they probably get a discount on storage, but it's not something that would make storage costs just go away.