> The chip foundry wouldn't know what the FPGA will be used for, and where the proverbial "privilege bit" will end up being laid out on the chip, which mitigates against Privilege Escalation hardware backdoors. Exposure is limited to DoS attacks being planted into the silicon during FPGA fabrication, which yields a significantly improved level of assurance (i.e., the computer may stop working altogether, but can't betray its owner to an adversary while pretending to operate correctly).
I suppose in theory the FPGA could contain a hidden CPU that has full read/write access to the FPGA program.
Further, if the system becomes popular and more FPGAs need to be produced for the same system or the next generation, then the foundry has additional information and they can make a good guess of where the privilege bit will be. Even simpler, they could program an FPGA with the code and figure it out manually.