Most of the places Apple has given themselves special powers is mostly a shortcut to avoid the hard work of a publicly accessible API and entitlements. Not always, sometimes it really is them favouring themselves, but I'd say that's the exception rather than a rule. I'm guessing Apple will mostly do the legwork to create entitlements and APIs and transition the Apple apps rather than actually remove the restriction.
This will result in some types of apps that are currently not allowed being possible, but I think it's going to be a lot fewer use cases than people think. For example, I don't see side loaded NES emulators being allowed to have a JIT.