Cells are shaped like cells (which is to say
ugly bags of mostly water) because they are self-perpetuating chemical reactions in solution. We usually conduct our chemical reactions in vessels that are round along at least one axis, maybe almost two for our round-bottomed flasks. This is natural because we're enclosing a maximum volume of our solution with a minimal surface (cell membrane or borosilicate glass).
On a macro scale, life tends to be bilaterally or radially symmetrical, but our robots are not necessarily like that, just considering even factory robots which are often an arm and little else. So, at the micro scale, I don't think they have to resemble "life" there, either. I'm hardly suggesting some kind of tinkertoy with one atom here and another atom there and the strut being, instead of wood, a covalent bond. No, I think we would need more atoms than that.
Frankly, we haven't much tried to scale down our robotics. Oh, you'll find someone who will produce the flagellar motor (a mere forty-five nanometers, compared to the ten thousand nanometers of a human cell) but not much else. I wouldn't worry about the thermodynamics and quantum effects until we're down to that motor level.