It does sound like a just-so story. Whether it is or not I couldn't say. Military thinking is often so complex that it can be hard to derive the rationale behind any particular practice, if indeed there is one. All military edicts are the result of conscious decisions, but the hard part is in determining why that decision was made. Was it arbitrary, was it for a conscious reason, or was it seemingly arbitrary but actually the result of far-reaching, emergent military understanding? I can think of several military practices which seem inane and even internally self-contradictory which are most likely preserved by a large-scale probabilistic understanding of their effects. Sometimes bureaucracy is smarter than individual people.
It is dubious, but I wouldn't absolutely rule out the hat edict as having a purpose. Remembering to wear something on your head is definitely an acquirable muscle memory.
> like the part where if you're walking with someone, the senior ranking person is on the right hand side--what, do you get shot at more often from the left hand side?
This example, on the other hand, probably is the result of conscious, practical decision making. You are better positioned with your sword arm free. It seems reasonable that the senior ranking person would insist on walking on the side that allowed them to have their sword arm (pistol arm) free in case of attack.
You can build a ramp around a tower in two ways. One direction puts your right hand on the side open to the air. The other pins it against the tower wall. Towers were built so that the direction of the ramps encircling them allowed defenders at the top to have their sword arms free to the open air. Attackers coming up with the ramp would have their sword arms inhibited by the face of the tower. You can verify this by inspecting the construction of the towers.