That's the problem. It was designed for 60s-style boarding via air-stairs on the ground (rather than modern jetways from the terminal) so it's too low down. This requires doing funky things to fit modern, large, energy-efficient engines, starting with those weird flat-bottom cowlings and ending in moving the engines back and changing their angle, which changes the flight characteristics of the plane so much it needed MCAS to compensate.
> So what would be changed in a complete overhaul of the aircraft
The certification, meaning pilots would need re-training since it's no longer the same plane.
The MCAS thing clearly changed the plane so much it should have required re-training anyway, which is why the whole thing is so dumb.