Type certificates are for the whole type, but you are right in that I got it wrong that airworthiness is done by the manufacturer: it’s actually done by CAMOs. In any case, FAA just gives the paper, but does not go around checking bolts and nuts.
Delta has its own CAMO (Delta TechOps), which I assume has done the maintenance of this aircraft, but it is yet to be seen whether they followed everything to the T or is there something missing from Boeing’s part.
As I said in another comment, I doubt everyone here (which is not bad, it’s just not assuming by default that everything is well done everywhere) and will wait for the FAA report.