The article somewhat suggests that the guy used the airport's wifi. In this case and assuming that the wifi network supports government surveillance by design, end-to-end encryption does not help.
What do you dislike about current E2EE?
However, on the WhatsApp webpage, you can find the E2EE hand-waving that I was alluding to: https://faq.whatsapp.com/820124435853543
"WhatsApp _considers_ chats with businesses that use the WhatsApp Business app or manage and store customer messages themselves to be end-to-end encrypted."
And later, they write that in many cases, Meta can actually read the messages.