I feel the same. I went to see Villeneuve's Dune in the theater - the first time I'd been to a movie theater since the equally underwhelming Valerian - and it was... fine, I suppose. I was really disappointed by the washed-out color schemes permeating every shot. It made Arrakis look more like Antarctica to me than the Sahara. The only thing I recall being truly wowed by were the awesome Mass Effect Reaper-like sound effects that accompanied some of the drop ships, but those were more menacing in, well, Mass Effect.
All that said, I do think the visuals of Lynch's Dune have had longer to enter the public imagination. Cryo's Dune game took a lot of visual and musical cues from that movie, and even Westwood's Dune 2 felt like it drew mostly from the Lynch version. For me as a teenager, those became the iconic representations of the Dune universe, and it's hard for me to imagine it looking any different. Perhaps in 20 years people who grow up with the Villeneuve version will feel the same way about it.