Many buses used in industrial control equipment such as CAN bus and Modbus do not use encryption. I suppose there's more risk if you're using TCP/IP and connect laptops that have been online to the LAN, because it's such a common protocol.
But again sophisticated malware could just wait until you have your USB CAN dongle connected to the laptop, and still attack the CAN bus. Heck, CAN bus and Modbus don't even have any password protection at all.