This is about error correction. The probes add a redundant convolutional code to their signal. Decoding this is easy as long as the error rate is low, a computer program can simply guess what bits have flipped. The issue becomes harder with a higher error rate, and a Viterbi decoder is computationally expensive, but can correct higher error rates than other constructions.

Since the signal strength degrades with distance to Earth, error correction naturally becomes much more of an issue later in the mission. I guess that the probes may have switched between different levels of redundancy through the mission, as the transmission error rate rises. But there was never a point where the convolutional code wasn't useful, it just became slightly more useful with a better decoder.