If you are like me, you've probably said “hmm…” to yourself multiple times when certain things were mentioned, because those were things that actually didn't work (that they were left intact really boosts the credibility of the author). From calculation software that had never ever been tested with out-of-ordinary data to the computer keeping the broken engine running. From pure luck with fuel tanks being almost full and unable to explode to absence of any physical kill switch to stop the engine. An hour being generously available to go through ALL the checklists to clear the notifications. An hour of passengers and crew staying on top of the poodle of fuel hoping that nothing would ignite it. Finally, pure randomness in debris flying the way it did. It's not a story of “layers of safety” overlapping, it's a story of “layers of randomness” overlapping.
What would be really interesting is a distribution of outcomes for all possible trajectories of debris, i. e., how (un)lucky they actually were. I guess corporations don't release models like those to the public.
Also, that special chamber for oil filter requiring precise drilling of a perfectly fine pipe seems “ewww” to me. It is not serviceable anyway without reinstalling everything from scratch, as far as I understand, why not make it a single piece?