Those numbers are for a programmer in/near big cities (Boston, Silicon Valley, NY, etc). Revise them down ~10% for more rural/suburban areas (but it's harder to find work beyond code-monkey level at all in many of those places). And all this is based on my anecdotal experience, so figure there is likely some selection bias.
In my experience, between federal and state income taxes, FICA, and sales tax you'll lose ~50% of your of your income to the government. And we have to save for our own retirement (we expect nothing from social security) and our kids' college education (currently ~15k-30K/year tuition).
How are your taxes/retirement/etc in Japan?