Cray XK6 System
cray.com
cray.com
Who drove them out of the supercomputer market? I know IBM still sells a bunch of mainframes running operating systems you and I have never heard of or used.
Huge companies like IBM can afford to make their own custom chips for their supercomputers (see Blue Gene L, P, and Q), but Cray isn't in that category. They do create a lot of software for using their systems, and the hardware is very well integrated, which is probably why they still do pretty good selling to national labs.
We're realizing that now while you can buy a bunch of computers and a 10 GbE switch, it can be worth it to get a nice fully-integrated supercomputer shipped to your door. It's ready to go, the software is installed, the cables are the right length (and neatly arranged!), and when a node burns out you just mail it back to Cray for a replacement.
And I guess you didn't see the software environment either? It's really impressive. Check out the "Brochure" PDF for a lot more information.