IMHO, most fields in biology lack good on ramps when compared to CS. I think part of the reason is that it's way easier to get someone to install Python than to get access to a mass spectrometer. A big factor in me studying Biochemistry in undergrad was that it was way easier to self-teach myself the parts of CS that interested me than it was for Biochemistry, in my estimation.

I'm sorry I don't have a better answer for you, I hope someone else here does!

It really depends on your prior knowledge and what aspect of proteomics you are most interested in. A good starting point is here:

https://proteomicsnews.blogspot.com/p/resources-for-newbies....

Also, if you haven't already, maybe take a look at transcriptomics first, as there's more introductory material on this topic. For instance, there's an excellent online course at https://diytranscriptomics.com/.

Actually, to answer my own question, this seems like a good intro article: https://erictopol.substack.com/p/spatial-biology-is-lighting...

There is nothing that I can think of. The tools of the trade are mass spectrometers, most dominantly right now the high end Orbitraps and the TIMS-TOF. If you’re interested in instrumentation I can send you some resources.

There’s a few good reviews I can send you if you’re interested. Let me know, I’d be happy to connect.