A desktop app based on Electron-Chromium runtime has more integration options with the operating system. E.g. file system access, taskbar/Dock icon and notifications, runs in the background, etc.
If a developer were to create a 100% pure web url app running locally on https://127.0.0.1/foobarapp.html -- ... they'd quickly run into browser's limitations. For example, the sandboxed security model won't let the Javascript inside of foobarapp.html iterate all files of the local file system. And Mozilla's new filesystem api isn't really available yet: https://caniuse.com/native-filesystem-api
Not sure if there's any "deception" here. Developers just want to write desktop apps leveraging their existing Javascript knowledge instead of learning C++/C#/Swift for each platform and trying to manage feature parity in separate code bases.