For more nuanced guidelines, I recommend the Japan Style Sheet published by the Society of Writers, Editors, and Translators in Tokyo. It can be downloaded for free at [1]. An excerpt:
“Japanese write their names in their own language surname first, as do Chinese and Koreans. After contact with the West was reestablished in the mid-nineteenth century, many Japanese adopted the practice of giving their surname last in international contexts. Japanese learn in school to reverse their names when writing or speaking in English and their domestic English-language media follow this practice, as do almost all other media around the world. Especially in translations, either name order may be adopted. Writers and editors may also choose a hybrid approach.” (p. 37)