Are those files as 'always keep offline'? If not, the backup process might not trigger a download.
I know what you're saying though. If you took something like Arq Backup and pointed it at you're OneDrive folder, I don't know how it would work, but suspect it would fail with files-on-demand because it takes a VSS snapshot to get a stable point-in-time. I've never tested, but assume working off a snapshot doesn't trigger the download for files-on-demand and it would feel broken to anyone that doesn't realize what's going on.
That's a good observation, but unlikely to be related to what I'm seeing here.