My biggest pet peeve with D3 is the lack of TypeScript friendly-ness. I not only mean the lack of official typescript .d.ts bindings, but the API itself is completely not designed for strict typing. Functions are heavily overloaded/polymorphic, take all sort of different types of parameter shapes, and change their return values on what is passed in etc. My experience was always, once I got my code "properly" typed, the next update of the .d.ts bindings would break again, and this would repeat every couple of weeks.