https://www.atlasobscura.com/places/14th-street-union-square...
Every station has lining boards that the conductor must check before opening the doors to ensure that the entire train is stopped along the platform:
So for a long time, drivers had to manually stop the train at alignment points. This did cause occasional delays and problems, but it wasn't unworkable. As a passenger you did sometimes notice that the train doors weren't aligned perfectly with the platform doors. Now days, of course, it stops perfectly every time.
They built a new line on second Ave with cavernous station mezzanines and couldn’t be bothered with doors there either. Track, signals, trains were all new.