It’s kind of a political hot potato few want to touch these days. A tunnel feels like a no brainier but a lot of NIMBY types in Staten Island don’t want a fast connection to the rest of the city as it would likely change the area dramatically.
The Verrazano Bridge itself was designed under Robert Moses's eye, and he shut down the idea of a subway link early on[2].
[1]: https://en.wikipedia.org/wiki/Staten_Island_Tunnel
[2]: https://www.nytimes.com/1956/04/09/archives/moses-bars-train...
Bridges can also be tall, if the concern is cutting boat traffic.
It would also be a massive eyesore
There is some remote possibility of going out of the way to link to the F train, which even has an essentially-unused express track (portions of the system are 3-track but more of the relevant route is a full 4-track). The big problem with this is that it eventually dumps you onto the 6 Ave Local, and 6 Ave is pretty much full, local or otherwise. The only other option is the IND Crosstown, which goes to Bed-Stuy, Williamsburg, Greenpoint and Queens instead of Manhattan. The smaller problem is that the express train stops here are awkwardly located, and the potential transfer points for other lines tend to be crowded.
In short, all the good subway capacity into Manhattan is already claimed by existing services. This makes sense! The best ones are all full and the ones with spare capacity are less popular for good reason. It’d be a waste otherwise.
If you’re looking to build more capacity, you’ll need something dramatic like connecting the Second Avenue Subway. At that point I’d want to hook it up to the B/D tracks via the Rutgers Tube, send the D in Manhattan onto the new line, and divert the D in Brooklyn via the F express tracks, instead of the Brooklyn 4 Ave Express. (You could trade the B line with some clever swaps near Chrystie as an alternative.) This would free up capacity for the Staten Island service on the 4 Ave link, a much better proposition.
But given that building the existing Phase 1 mile-and-a-bit of the Second Avenue Subway ran billions of dollars and took over 70 years to happen… you may see the size of the problem you face adding many new miles in Phase 3 to connect it to the area near the Christie St Connection.
Now the pandemic might have mitigated some of this, but it’s also mitigated the benefit of the scheme in the first place, and it has strained the budgets for such projects too.