These things are 0.02mm ( 0.0008 inches) wide, ~1/100 millionth of a cubic centimeter, individual bubbles or even fairly large numbers of bubbles of that size aren’t a significant issue.
The major component in atmospheric air, nitrogen (N2), is already abundant in the blood too, so it isn't an issue. If I remember correctly, our bodies are generally in equilibrium with the outside air in terms of N2 partial pressure.
Admittedly, a small air bubble in the blood bypasses a lot of the specialized membranes our alveoli use to make their gas exchange, but blood itself can manage a bit of air just fine.
If you're asking about the nanorobot, however: The article says it's not yet biodegradable to the degree they want to make it.
In addition, a bubble shows surface tension. This is exactly the problem of divers who surface too fast: the excess of air dissolved in the blood due to higher pressure aggregates into bubbles.
EDIT: By excess of air I mean Nitrogen. We don't have proteins to bind gaseous Nitrogen.
Also another comment next to yours said 2-3cc.
This only applies to veinous blood.
You do not want arterial blood to be messed with generally at all, as far as I understand.
There are mechanisms to expel so called "foreign bodies", through the details are important (how long until they are detected, ...)