Graphviz is very useful for visualizing large graphs. You can learn to use it effectively in under five minutes. It's also very easy to transform CSV data into graphviz markup by piping it through one or two sed scripts.
http://en.wikipedia.org/wiki/DOT_language
Also, these are useful:
http://www.graphviz.org/pdf/dotguide.pdf
http://linuxdevcenter.com/pub/a/linux/2004/05/06/graphviz_do...
http://landoflisp.com/source.html (check out graph-util.lisp and wumpus.lisp)
Chapter 8 is even available as a free download: