As a mathematician that works with proof assistants, I largely agree with this thesis. However, I don't think there is any reason to have any such fears associated with formal methods. I think informal proofs, as the exist in both CS and maths, are here to stay. And, on the contrary, I think investigations into formal methods can drive new theory and insight. For example, one could say that the formal system of homotopy type theory (HoTT) is a programming language created in order to reason about highly "coherent" mathematical structures, which HoTT often does very well. In addition, being a formal system, HoTT is well-suited for formal methods -- but even so, many mathematicians still prefer to work informally in this language.
In summary, I think the article makes a valid point, but the motivating fears seems unfounded in retrospect.