Can you be more specific? As is, it's hard to follow what the issue was that you encountered.
I do use some libraries through PyCall. This is a relatively frequent source of trouble, with libraries breaking because of 3rd party dependencies, behaviour changing, or even somehow installation suddenly stops working. This all happens in the python side, to the point that I am currently replacing all the libraries even if it means porting some of them or even a loss of functionality.
I stay away from code rewrites like the plague, which is why SciML maintains so many wrapper packages. It's less work and if there's nothing new then rewriting is thankless work. Unless we have some kind of angle for something new in the algorithm, we just recommend someone use the same old wrappers (for instance, IDA with fully-implicit DAEs). We won't beat the C/Fortran code without something new. However in most areas there's lots of interesting research to be done. I could "sabbatical as an academic" and spend the next 3 years just improving explicit Runge-Kutta methods: those for example are probably still 4x away or so from what I think is theoretically possible, but that's not going to happen any time soon since we have some real applications to focus on.
Those package deprecations mentioned above were deprecated by community efforts (BifurcationKit.jl replaced PyDSTool wrappers and was done by Romain Veltz, FEniCS wrappers were largely replaced by Gridap, and SymEngine was replaced by Symbolics which is largely the work of one of the Julia Lab PhD students Shashi). Even those had a largely new element to them though, with BifurcationKit focusing a lot on recent algorithms that other bifurcation software don't have (like the deflated Newton methods), and Shashi's Symbolics.jl work focusing on generality of term rewriting systems to allow for alternative algebras.
That's basically my point. Readers should be aware of who is making suggestions and why they might be making them. You have a clear status and financial drivers to say "only use Julia, it's ready for anything, it's fine" while not saying any of the flaws other then "it's fixed if you compile the branch of the grad student I asked to fix it's PR".
Also the type of work you do is incredibly rare. Most people considering trying to use Julia for their day job don't have the resources you have nor the needs or desires you have. In most cases getting one of the most foremost scientific computing in Julia experts take on what tools they should use really doesn't map well to practical users.