Sure we do. It is different and no simpler than modeling weather. Weather at least has the advantage of a 3D system decomposing into a 2D sphere X 1D height dimension via a thin shell approximation, but also has the complexity of humidity. The Sun is intrinsically a 3D system, but has electromagnetic complications.
Without the nonlinearity of water vapor<=>liquid<=>ice, Earth weather predictions would be pretty darn easy.
IANA astrophysicist, but I'm guessing the same would be true about the Sun without magnetic fields.
You can’t just entirely “model” something as complex as a star anymore than you can do large scale simulations of the universe at the atomic level. If we could we would be much more ahead as a civilization.