I certainly haven't been exhaustive, but after reading Taubes' Good Calories, Bad Calories and Why We Get Fat I pulled a couple dozen studies to read. Most were because I found his claims implausible, a few because they were just interesting. A couple times I thought he was full of shit (eg. claiming there's no link between increased saturated fat in diet and precursors to atherosclerosis) and tried to find studies to disprove his claims.
I didn't find him to be misrepresenting studies, and I didn't find research that disproved the claims I found implausible. I was underwhelemed by the rigor of a few of the studies he cited, but he was either citing them as historical curiosities or alongside other, more rigorous notes.
I regularly pull sources for the science I read and Taubes fared far better than usual.