>Since humans only get one set of fingerprints for life, fingerprints should only be stored and compared on secure enclaves on your own devices (like iPhones). It's way too risky otherwise.
This exactly!! QFT!
No biometrics should ever be used for shared or public devices! Biometrics are fine for personal devices that are always with us, and not shared by others, especially anyone outside our family/household.
I've made my peace with biometrics as far as unlocking my phone via fingerprint. My threat model is such that a fingerprint lock is often safer than pecking in a long password. (Because I'm often surrounded by shoulder surfers.)
So yeah, if a restaurant is forcing employees to scan fingerprints (or retinas or DNA or saliva or what have you) on public or shared devices for purposes of clocking in, or payroll, or whatever, then that is wrong and a perversion of biometric authentication. The company would be much better served by a correct application of security techniques.
And yes, if this means going back to passwords for awhile, then so be it. Passwords are a good first-line auth measure for shared devices that are not open to the public (let's assume that this restaurant's devices were only physically accessible by employees in the back office or something.)
Another idea is to let the employees authenticate using their smartphone. My bank has something set up with this. You install a smartphone app, it authenticates you, and it vouches when you set foot in the bank so that the teller already has your account pulled up. Then, in terms of biometric locking for the smartphone, knock yourself out; the company has no need to collect the data, just interface to an app.