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It's been a long time since I set it up, but I believe each cloud sync task will sync one directory. So I've got two tasks: one that syncs /mnt/main/media/Photos in PUSH/COPY mode, and one that syncs /mnt/main/Documents in PUSH/SYNC mode.

You should be able to accomplish the same, but you may need to either re-organize your stuff or set up multiple tasks.

edit: for clarification, "/mnt/main/media" contains various other subdirectories of Linux ISOs etc., which is why I push /mnt/main/media/Photos specifically.

I use rsync with Backblaze. I put everything I want sent to BB in /backupfolder/Archive, and everything else straight in /backupfolder. I have 2 rclone remotes, one pointing to another machine at my house, and 1 pointed to BB.

rclone should do this, its been a while since it set it up, but its a cli to manage cloud storage providers, Backblaze is supported.

I use cyberduck and just manually upload.