Microsoft was blocking competitors by requiring a fee for every processor sold by a manufacturer that offered Windows, whether that machine was sold with Windows or not, causing any other operating system sold on licensee machines to be more expensive for consumers. It wasn't bundling that was the issue in Microsoft Corp v Commission, it was tying applications together, such that if you purchase one application, you are forced to purchase another.
I don't see how it relates. Apple bundles software but does not sell what it bundles, nor even the OS, which is also free, nor is the consumer unable to remove that software or required to pay a licensing fee to Apple whether they run their OS or not, unlike with Microsoft Windows and Explorer. You can delete Safari and every application Apple bundles, including the OS, and you can not purchase it because it's free with the hardware. Apple is not tying applications, and there's nothing anti-competitive with their bundling.