You make an interesting point but I think the difference between the replicator and the microwave is pretty great, as we recently learned from our worldwide supply train issues.
The can of soup had a whole factory, with robotic and human workers, management, metals, fossil fuels, storage containers, inspectors, transportation devices, highways, warehouses and retailers that it needed to get to your microwave. When any of those are bottlenecked there's a huge problem. It will likely forever be a fantasy but a Star Trek type replicator would streamline that process by a fair margin and have far fewer critical links.
A real-world example would be the difference between a old-fashioned printed newspaper with no digital distribution and an online only paper. The print version might seem superior in some respects but by the time it would get to McMurdo, the news would already be pretty old, vs up to the minute currency for a web browser. And once we start talking Shackleton or beyond, the difference only gets worse. In fact a good use case for an autonomous robotic presence is extraterrestrial exploration or labor. They could endure higher g acceleration, long periods in cold storage, don't need atmosphere, and don't experience existential terror -- as far as we know!