They jump around the country, much less frequently going back to a hub as other airlines do. That means that the planes and crews have a relatively harder time recovering from system-wide disasters because they don't have as part of normal operations as much ability to centralize or pool resources and get people/planes reorganized. (everyone go back to base, consolidate passengers, crew, planes and redeploy them and sort things out in one place)
Unfortunate, but that's their model. Good for some purposes, not so good for others. Maybe it's them being quirky and an active choice. I mean, up until a few years ago they did not fly to Hawaii because their scheduling system / people / processes did not want to have redeye flights.