Everything about primary and secondary sex characteristics would not be affected by changing someone's chromosomes. Homologous sex structures diverge before birth based primarily on dht metabolism. Even then, chromosome expression doesn't always determine how dht will metabolize, meaning whatever chromosomes a person has can still lead to someone having any kind of primary and secondary sex characteristics. The six most common sex chromosome patterns in humans are XX, XY, XXY, XYY, X, and XXXY (in that order).
Sex and gender are both far more complex than merely chromosome expression, and chromosome expression is anything but a binary. This study has nothing to do with being male or female.