To put thing in perspective, US rail moves:
61 tons of freight per American each year
94 tons of freight per mile for each passenger-mile on rail
1/3 of all export goods move by rail
1.7 trillion ton-miles of freight
40% of US long distance freight by volume uses rail
So you have a problem in that increasing the costs to freight will affect all Americans in making them pay more for goods, whereas it will only benefit those passengers using rail. So politically, this is a tough sell. I think you need to put down dedicated track for passenger rail if you want it to be prioritized in our existing rail system, as it's currently a rounding error compared to freight.
That said, I think you will find that there are transportation corridors where there is the political will to fund laying down dedicated track for passenger rail. The way to think about it is that rail maybe costs $X per mile of track, but provides 100000X benefit for freight, and maybe 10x benefit for passenger traffic, so while you would never prioritize passenger traffic over freight, or even treat them equally, it still makes sense to build dedicated tracks for passenger rail.