From personal experience, you don’t ever “just use TypeScript”. You have to install plugins, adapters, parsers for every other tool (linters, formatters, bundlers) to also make them work with TypeScript. Adding TypeScript into the mix increases the number of dependencies (dev or not) dramatically. If you use the jsdoc flavor of TypeScript, you only need to install the one dependency.
Not saying it’s the best reason, but a reason nonetheless.