When commercial GPS-devices begin to locate themselves, they need four satellites for the process: Three for the coordinates and one for time. I believe, that military system works the same way. If you cut down the signals for a while, the droid will, when the signal (delayed one) comes back, maybe adjust it's clock a couple of 1/10000ths of second to get GPS-locationing back in business. And after that the signal transmitter decides, where the droid will fly.
Many guesses here, but this is just one suggestion free for discussion, how the system might work...