If coming to New York meant that you had to put four people in a three bedroom apartment that's uncomfortably far from a subway line, instead of buying a nice little condo in Omaha, this does not mean that you are not "really" better off than your counterpart in Omaha; it means that you have chosen to consume your extra wealth in the form of "living in New York" rather than in the form of spacious real estate, cheap groceries, and an easy commute.
At some point, the crowd creates the job market creates the crowd...and it snowballs. Our preferences stopped mattering a long time ago.
Whether SF is 'nicer' than somewhere else is down to the individual's preferences.
Who hasn't said "That job looks interesting but the office location is a pain in the ass and will add 30 minutes each way to my commute"?