A human being, on the other hand, has the capacity, when faced with unexpected or unfamiliar conditions, to exercise something we call "judgement" in an attempt to develop an appropriate response. I'm not saying that it's impossible for an automated system to have this capacity, I'm saying that no current automated systems have it, and that we're nowhere near to developing such a system any time soon.
I do believe they were planning to deploy it as a suggestion system though, which would suggest a course of action, and then leave it to the pilot to implement it or not. Then the judgment gets more murky; now the system is doing some of the judgment (evaluation of alternatives, etc.) that a human pilot would normally do, but leaving some of the judgment (accept the suggestion, modify it) still to the human.
edit: Here's a more recent paper than the one I'm thinking of, but must be the same project: http://ti.arc.nasa.gov/m/profile/de2smith/publications/IAAI0...